HPC

I am trying to submit a Batch job to a cluster

my primes.pbs job script :

======================================

#!/bin/bash -l

#pbs -l walltime=00:10:00

#pbs -l nodes=1:ppn=5

#pbs -l mem=1gb

#pbs -l file=1gb

#pbs -M husein.alhamada@ulb.ac.be

cd /sulb1/tony/egsnrc/BEAM_EX16MVp/

exb BEAM_EX16MVp EX16MVp 700icru p=5 >& mywork.out

=======================================================

please if you have one good example file to submit a scheduled batch job

share it with us

Thanks

Hello my colleagues

is it possible to change the central axis of FLATFILT CM, so instead of the default values (X=0,Y=0) I want to do it (X=0.02,Y=0)cm

in which file ?

Thank you

Hello Mr.Frederic Tessier

Hello my colleagues

how can I add a 0.02 cm shift of Source 3 in BEAMnrc regarding to the central axis of the rest of the machine ?

Thank you

Hi

I have a Elekta machine which the initial electrons source is shifted and rotated from the central axis of the rest parts, so how can I simulate this with BEAMnrc ???

Hi

The accelerator has source of initial electrons, this source has shift from the center and rotation angle, so what I have to do to simulate this source?

Thanks

Hello

is there anybody working with EGSnrc with Cluster ?

inside my_work.bash file text :

!/bin/bash -l

PBS -l walltime=00:01:00

PBS -l nodes=1:ppn=8

PBS -l mem=60=gb

PBS -N my_work.bash

cd /sulb1/username/egsnrc/dosxyznrc/

exb dosxyznrc patient1 521icru p=256

when I execute this file with (qsub my_work.bash), I get :

!/bin/bash: no such file or directory

PBS: command not found

any advice to submit the calculation with right text ??

CTCreate

I want to create Phantom more than 128x128x128….eventhough I modified the I,J,KMAX in (DOSXYZnrc and ctreate ) values and after I recompile by make , it has the same results , I can not create 512x512x188 patient phantom ……… please advice me

Dear friends

– anybody using CERR/MATLAB , to compare results with TPS ??, is there other tools to compare MC with TPS ??

– when I load CT siles to CERR , by this ((([ctcell,ct_xmesh,ct_ymesh,ct_zmesh] = dicomrt_loadct(‘Patient5.txt’);)))

I always get this message :

Reference to non-existent field ‘ImagePositionPatient’.

Error in dicomrt_loadctlist (line 72)

xlocation(nct)=info_temp.ImagePositionPatient(1);

Error in dicomrt_loadct (line 44)

[filelist,xlocation,ylocation,zlocation,modifUID,user_request] =

dicomrt_loadctlist(filename);

please advise me

Dear friends

– anybody using CERR/MATLAB , to compare results with TPS ??, is there other tools to compare MC with TPS ??

– when I load CT siles to CERR , by this ((([ctcell,ct_xmesh,ct_ymesh,ct_zmesh] = dicomrt_loadct(‘Patient5.txt’);)))

I always get this message :

Reference to non-existent field ‘ImagePositionPatient’.

Error in dicomrt_loadctlist (line 72)

xlocation(nct)=info_temp.ImagePositionPatient(1);

Error in dicomrt_loadct (line 44)

[filelist,xlocation,ylocation,zlocation,modifUID,user_request] =

dicomrt_loadctlist(filename);

please advise me

Dear friends

I have a cylinder Block which has not the same center of BEAMnrc Model (its center is shifted 6 mm from the center of the model), so I could not find any component Module CM has this feature,

Please advice me